Introduction

Last updated on 2024-06-13 | Edit this page

Overview

Questions

What are basic principles for using spreadsheets for good data organization?

Objectives

Describe best practices for organizing data so computers can make the best use of data sets.

Good data organization is the foundation of your research project. Most researchers have data or do data entry in spreadsheets. Spreadsheet programs are very useful graphical interfaces for designing data tables and handling very basic data quality control functions.

Spreadsheet outline

After this lesson, you will be able to:

Implement best practices in data table formatting
Identify and address common formatting mistakes
Understand approaches for handling dates in spreadsheets
Utilize basic quality control features and data manipulation practices
Effectively export data from spreadsheet programs

Overall good data practices

Spreadsheets are good for data entry. Therefore we have a lot of data in spreadsheets. Much of your time as a researcher will be spent in this ‘data wrangling’ stage. It’s not the most fun, but it’s necessary. We’ll teach you how to think about data organization and some practices for more effective data wrangling. Not only will this save time and effort, it also paves the way for more equitable and inclusive science. Making our work more accessible provides wider avenues for collaboration and improvement!

What this lesson will not teach you

How to do statistics in a spreadsheet
How to do plotting in a spreadsheet
How to write code in spreadsheet programs

If you’re looking to do this, a good reference is Excel Cookbook, published by O’Reilly.

Why aren’t we teaching data analysis in spreadsheets

Data analysis in spreadsheets usually requires a lot of manual work. If you want to change a parameter or run an analysis with a new dataset, you usually have to redo everything by hand. (We do know that you can create macros, but see the next point.)
It is also difficult to track or reproduce statistical or plotting analyses done in spreadsheet programs when you want to go back to your work or someone asks for details of your analysis.

Spreadsheet programs

Many spreadsheet programs are available. Since most participants utilize Excel as their primary spreadsheet program, this lesson will make use of Excel examples.

Free spreadsheet programs that can also be used are LibreOffice Calc, and even Google Sheets.

Commands may differ a bit between programs, but the general idea is the same.

Exercise

How many people have used spreadsheets in their research?
How many people have accidentally done something that made them frustrated or sad?

Spreadsheets encompass a lot of the things we need to be able to do as researchers. We can use them for:

Data entry
Organizing data
Subsetting and sorting data
Statistics
Plotting

We do a lot of different operations in spreadsheets. What kind of operations do you do in spreadsheets? Which ones do you think spreadsheets are good for?

Problems with Spreadsheets

Spreadsheets are good for data entry, but in reality we tend to use spreadsheet programs for much more than data entry. We use them to create data tables for publications, to generate summary statistics, and make figures.

Generating tables for publications in a spreadsheet is not optimal - often, when formatting a data table for publication, we’re reporting key summary statistics in a way that is not really meant to be read as data, and often involves special formatting (merging cells, creating borders, making it pretty). Cutting and pasting from a spreadsheet to a document software (like Word) can have unpredictable results. We advise you to create tables within these document software using the document’s own table editing software.

The latter two applications, generating statistics and figures, should be used with caution: because of the graphical, drag and drop nature of spreadsheet programs, it can be very difficult, if not impossible, to replicate your steps (much less retrace anyone else’s), particularly if your stats or figures require you to do more complex calculations. Furthermore, in doing calculations in a spreadsheet, it’s easy to accidentally apply a slightly different formula to multiple adjacent cells. When using a command-line based statistics program like R or SAS, it’s practically impossible to apply a calculation to one observation in your dataset but not another unless you’re doing it on purpose.

Using Spreadsheets for Data Entry and Cleaning

However, there are circumstances where you might want to use a spreadsheet program to produce “quick and dirty” calculations or figures, and data cleaning will help you use some of these features. Data cleaning also puts your data in a better format prior to importation into a statistical analysis program. We will show you how to use some features of spreadsheet programs to check your data quality along the way and produce preliminary summary statistics.

In this lesson, we will assume that you are most likely using Excel as your primary spreadsheet program - there are others (gnumeric, Calc from OpenOffice), and their functionality is similar, but Excel seems to be the program most used by biologists and ecologists.

In this lesson we’re going to talk about:

Key Points

Good data organization is the foundation of any research project.