Summary and Setup

Databases are useful for both storing and using data effectively. Using a relational database serves several purposes.

  • It keeps your data separate from your analysis. This means there’s no risk of accidentally changing data when you analyze it.
  • If we get new data we can rerun a query to find all the data that meets certain criteria.
  • It’s fast, even for large amounts of data.
  • It improves quality control of data entry (type constraints and use of forms in Access, Filemaker, etc.)
  • The concepts of relational database querying are core to understanding how to do similar things using programming languages such as R or Python.

This lesson will teach you what relational databases are, how you can load data into them and how you can query databases to extract just the information that you need.

Getting Started

Data Carpentry’s teaching is hands-on, so participants are encouraged to use their own computers to insure the proper setup of tools for an efficient workflow.
These lessons assume no prior knowledge of the skills or tools.

Prerequisites

This lesson requires:

  • Working copy of DB Browser for SQLite for SQL
  • A dataset

Follow the directions in the Setup section to download both the DB Browser for SQLite and the data to your computer and follow any installation instructions.

Please make sure to install everything before working through this lesson.

For Instructors

If you are teaching this lesson in a workshop, please see the Instructor notes.

Setup

Data

This lesson uses specific data files from the Portal Project Teaching Database. To get the data, go to the data location on figshare and click on the Download all button to download the zip file.

If you are working on this lesson on your own, you can move the zipped data file to anywhere on your computer where it is easy to access, and unzip the files. If you are working on this lesson as part of a workshop, your instructor may advise you to unzip the data files in a specific location.

See the Ecology Workshop Overview Page for more details about the data set.

Software

Download DB Browser for SQLite for your operating system from https://sqlitebrowser.org/dl/. DB Browser for SQLite is a visual tool to create, edit, and query SQLite databases. SQLite is included with DB Browser for SQLite, so it does not have to be installed separately.

  • There are a few options for Windows, but most modern computers can use the Standard installer for 64-bit Windows version
    • The .zip (no installer) version can be run directly from the folder, after extracting the contents of the zip file. It will not show up in the Start menu.
  • There are also two options for macOS. Most people should use the DB Browser for SQLite (Universal) installer.

Launch DB Browser for SQLite to confirm that the installation was successful.

Am I ready?

The first lesson episode has instructions on loading the data in DB Browser. To test your setup, you can follow the instructions for importing your data into DB Browser under the sections Relational Databases or Import.